Merge pull request #43 from VectorInstitute/fix_metric_calc #66
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| name: code checks | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - '**.py' | |
| - uv.lock | |
| - pyproject.toml | |
| - '**.ipynb' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - '**.py' | |
| - uv.lock | |
| - pyproject.toml | |
| - '**.ipynb' | |
| jobs: | |
| run-code-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 | |
| with: | |
| # Install a specific version of uv. | |
| version: "0.9.11" | |
| enable-cache: true | |
| - name: "Set up Python" | |
| uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 | |
| with: | |
| python-version-file: ".python-version" | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v6 | |
| with: | |
| node-version: '22' | |
| cache: 'npm' | |
| cache-dependency-path: catalog/package-lock.json | |
| - name: Install Node dependencies | |
| working-directory: catalog | |
| run: npm ci | |
| - name: Install the project | |
| run: uv sync --all-extras --dev | |
| - name: Install dependencies and check code | |
| run: | | |
| source .venv/bin/activate | |
| pre-commit run --all-files | |
| - name: pip-audit (gh-action-pip-audit) | |
| uses: pypa/[email protected] | |
| with: | |
| virtual-environment: .venv/ | |
| ignore-vulns: | | |
| GHSA-4xh5-x5gv-qwph |