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WangLab-ComputationalBiology

6 followers
United States of America
https://www.mdanderson.org/research/departments-labs-institutes/labs/linghua-wang-laboratory.html

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MultiMap MultiMap Public

MultiMap: A R package for mapping cells to reference contains batches

R 6 1
btc-scrna-pipeline btc-scrna-pipeline Public

A Nextflow pipeline for single-cell RNA-Seq dataset

Groovy 4 5
btc-sc-notebooks btc-sc-notebooks Public

Scripts and Notebooks related to the Single-cell pipeline

R 1 1
btc-sc-mvp btc-sc-mvp Public

A Nextflow pipeline to process single-cell datasets

Nextflow 2
btc-sc-containers btc-sc-containers Public

A repository containing all Dockerfile related to the single-cell pipeline

Dockerfile 2
btc-sc-modules btc-sc-modules Public

Nextflow 4

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Showing 10 of 13 repositories

SCRATCH-QC Public
SCRATCH subworkflow for align and quality control

WangLab-ComputationalBiology/SCRATCH-QC’s past year of commit activity

Nextflow 0 GPL-3.0 3 1 2 Updated Oct 25, 2025
SCRATCH-Annotation Public
SCRATCH subworkflow for cell annotation

WangLab-ComputationalBiology/SCRATCH-Annotation’s past year of commit activity

Nextflow 0 3 0 1 Updated Feb 6, 2025
SCRATCH-TCR Public
SCRATCH subworkflow for integrating scRNA and scRNA data

WangLab-ComputationalBiology/SCRATCH-TCR’s past year of commit activity

Nextflow 0 GPL-3.0 1 0 0 Updated Aug 12, 2024
SCRATCH-CNV Public
SCRATCH subworkflow for CNV analysis

WangLab-ComputationalBiology/SCRATCH-CNV’s past year of commit activity

Nextflow 0 0 0 0 Updated Jul 30, 2024
btc-scrna-pipeline Public
A Nextflow pipeline for single-cell RNA-Seq dataset

WangLab-ComputationalBiology/btc-scrna-pipeline’s past year of commit activity

Groovy 4 MIT 5 1 0 Updated Jul 25, 2024
btc-mouse-pilot Public
This repo contains all scripted used for the preliminary analysis of the BTC Mouse Pilot

WangLab-ComputationalBiology/btc-mouse-pilot’s past year of commit activity

0 0 0 0 Updated Jul 18, 2024
nf-quarto Public Forked from oandrefonseca/nf-quarto
A template for pipeline development using Nextflow integrated with Quarto

WangLab-ComputationalBiology/nf-quarto’s past year of commit activity

Nextflow 0 GPL-3.0 3 0 0 Updated Jul 15, 2024
btc-sc-containers Public
A repository containing all Dockerfile related to the single-cell pipeline

WangLab-ComputationalBiology/btc-sc-containers’s past year of commit activity

Dockerfile 0 2 0 0 Updated Jan 31, 2024
btc-sc-notebooks Public
Scripts and Notebooks related to the Single-cell pipeline

WangLab-ComputationalBiology/btc-sc-notebooks’s past year of commit activity

R 1 1 0 0 Updated Dec 7, 2023
btc-sc-modules Public

WangLab-ComputationalBiology/btc-sc-modules’s past year of commit activity

Nextflow 0 4 0 1 Updated Nov 15, 2023

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