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Bump htsjdk dependency version to 2.20.3 #2195

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Bump htsjdk dependency version to 2.20.3 #2195

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2 changes: 1 addition & 1 deletion adam-core/src/main/scala/org/bdgenomics/adam/util/FileMerger.scala
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Expand Up @@ -224,7 +224,7 @@ private[adam] object FileMerger extends Logging {
if (writeEmptyGzipBlock) {
os.write(BlockCompressedStreamConstants.EMPTY_GZIP_BLOCK)
} else if (writeCramEOF) {
CramIO.issueEOF(CramVersions.DEFAULT_CRAM_VERSION, os)
CramIO.writeCramEOF(CramVersions.DEFAULT_CRAM_VERSION, os)
}

// flush and close the output stream
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2 changes: 1 addition & 1 deletion adam-core/src/main/scala/org/bdgenomics/adam/util/ParallelFileMerger.scala
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Expand Up @@ -97,7 +97,7 @@ private[adam] object ParallelFileMerger extends Logging {
if (writeEmptyGzipBlock) {
os.write(BlockCompressedStreamConstants.EMPTY_GZIP_BLOCK)
} else if (writeCramEOF) {
CramIO.issueEOF(CramVersions.DEFAULT_CRAM_VERSION, os)
CramIO.writeCramEOF(CramVersions.DEFAULT_CRAM_VERSION, os)
}

os.flush()
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4 changes: 2 additions & 2 deletions pom.xml
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Expand Up @@ -23,12 +23,12 @@
<scala.version.prefix>2.12</scala.version.prefix>
<spark.version>3.2.0</spark.version>
<parquet.version>1.12.1</parquet.version>
<hadoop-bam.version>7.9.2</hadoop-bam.version>
<hadoop-bam.version>7.10.0</hadoop-bam.version>
<slf4j.version>1.7.30</slf4j.version>
<bdg-formats.version>0.17.0-SNAPSHOT</bdg-formats.version>
<bdg-utils.version>0.4.0</bdg-utils.version>
<grizzled-slf4j.version>1.3.4</grizzled-slf4j.version>
<htsjdk.version>2.19.0</htsjdk.version>
<htsjdk.version>2.24.1</htsjdk.version>
<scoverage.plugin.version>1.1.1</scoverage.plugin.version>
</properties>

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