Search results

Is the bias(weight) obtained for each bin by the kr method of hicCorrectMatrix a division bias(weight)?

Status: Open.

#951 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 25, 2025

Range of balance correction

Status: Open.

#950 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 11, 2025

Does it support no enzyme cleavage site ?

Status: Open.

#949 In deeptools/HiCExplorer;

· normal-154 opened on Sep 8, 2025

Persistent low-coverage “blue stripes” in Hi-C contact maps (dm6)

Status: Open.

#948 In deeptools/HiCExplorer;

· Cathmyt opened on Aug 13, 2025

Issues with using hicTransform

Status: Open.

#945 In deeptools/HiCExplorer;

· HengkuanLi opened on Jul 14, 2025

Unexpected change in GInteractions row-count after hicNormalize / hicCorrectMatrix, and --load_raw_values flag not giving raw counts in normalized/corrected matrix

Status: Open.

#944 In deeptools/HiCExplorer;

· fatimanawmi opened on Jul 9, 2025

HicNormalize or hicCorrectMatrix

Status: Open.

#943 In deeptools/HiCExplorer;

· DakeshiKitano opened on Jun 28, 2025

Tips for running on a haplotype-resolved reference genome

Status: Open.

#942 In deeptools/HiCExplorer;

· marija-kra opened on Jun 25, 2025

hicPCA: The A/B compartments of the X chromosome is not properly recognized

Status: Open.

#941 In deeptools/HiCExplorer;

· lscnsdad opened on Jun 21, 2025

TADfind

Status: Open.

#940 In deeptools/HiCExplorer;

· mandexue opened on Jun 19, 2025

Using Pore-C with HiCExplorer?

Status: Open.

#937 In deeptools/HiCExplorer;

· Grisaru137 opened on Apr 22, 2025

hicCorrelate: can we retrieve the correlation matrix?

Status: Open.

#936 In deeptools/HiCExplorer;

· JosedelasHeras opened on Mar 31, 2025