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eLifePathways / sciencebeam-parser Public

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Switched to FastAPI#555

Merged

de-code merged 47 commits intomaineLifePathways/sciencebeam-parser:mainfrom

switch-to-fastapieLifePathways/sciencebeam-parser:switch-to-fastapiCopy head branch name to clipboard

Dec 10, 2025

Conversation Commits47 (47)Checks Files changed

Merged

Switched to FastAPI#555
de-code merged 47 commits intomainfrom
switch-to-fastapi

Commits

Commits on Dec 8, 2025

Added fastapi dependency
de-code
committed
Added simple fastapi server
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Merge branch 'main' into switch-to-fastapi
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Updated uv.lock
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committed
apply logging config in create_app to see logging
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committed
Test file input as a api endpoint dependency
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committed

Commits on Dec 9, 2025

Demonstrate dependency injection
de-code
committed
Only document the `input` file
de-code
committed
Moved app to separate package
de-code
committed
Moved dependencies to separate module
de-code
committed
Renamed to get_media_data_wrapper
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Use more modern Annotated throughout
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Added low-level router with pdfalto endpoint
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Added low-level tag
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committed
Added first and last page parameters
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implemented processHeaderDocument
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Return TEI or JATS depending on accept headers
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Document TEI and JATS content better
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Added /processFulltextDocument endpoint
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added /processReferences endpoint
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Added /processFulltextAssetDocument endpoint
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Moved API docs to separate module
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Added /convert endpoint
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Moved get_processed_source_to_response_media_type to separate module to allow re-use
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Added support for `includes` parameter in `/convert` endpoint
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Added generic eror handling
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Properly handle `file` upload
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Properly handle UnsupportedRequestMediaTypeScienceBeamParserError
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Attempt to use get_data_wrapper_with_improved_media_type_or_filename
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Also improve media type for convert api
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Added TestPdfAlto for API
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Converted all remaining api unit tests
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Implemented /models/segmentation
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Added /models/header endpoint
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Removed debug endpoints /process and /process2
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Correctly filter layout document
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Added /models/name-header endpoint
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Added /models/affiliation-address endpoint
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Added /models/fulltext endpoint
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Added /models/figure and /models/tables endpoint
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Added /models/reference-segmenter endpoint
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committed
Added /models/citation endpoint
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Commits on Dec 10, 2025

Added /models/name-citation
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committed
Link to API docs from index html
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committed
Removed flask
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committed
Replaced flask in logging config
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committed
re-ordered API endpoints to make more sense
de-code
committed

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