new methods and cleaned up docs

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: bayestestR
 Title: Understand and Describe Bayesian Models and Posterior Distributions
-Version: 0.17.0.1
+Version: 0.17.0.2
 Authors@R:
     c(person(given = "Dominique",
              family = "Makowski",
@@ -122,7 +122,7 @@ VignetteBuilder:
     knitr
 Encoding: UTF-8
 Language: en-US
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3
 Roxygen: list(markdown = TRUE)
 Config/testthat/edition: 3
 Config/testthat/parallel: true

NAMESPACE

@@ -2,10 +2,7 @@
 
 S3method(as.data.frame,bayestestR_mediation)
 S3method(as.data.frame,density)
-S3method(as.double,bayesfactor_inclusion)
-S3method(as.double,bayesfactor_models)
-S3method(as.double,bayesfactor_parameters)
-S3method(as.double,bayesfactor_restricted)
+S3method(as.double,bayestestRBF)
 S3method(as.double,map_estimate)
 S3method(as.double,p_direction)
 S3method(as.double,p_map)
@@ -17,12 +14,8 @@ S3method(as.list,bayestestR_eti)
 S3method(as.list,bayestestR_hdi)
 S3method(as.list,bayestestR_si)
 S3method(as.logical,bayesfactor_restricted)
-S3method(as.matrix,bayesfactor_models)
-S3method(as.matrix,bayesfactor_restricted)
-S3method(as.numeric,bayesfactor_inclusion)
-S3method(as.numeric,bayesfactor_models)
-S3method(as.numeric,bayesfactor_parameters)
-S3method(as.numeric,bayesfactor_restricted)
+S3method(as.matrix,bayestestRBF)
+S3method(as.numeric,bayestestRBF)
 S3method(as.numeric,map_estimate)
 S3method(as.numeric,p_direction)
 S3method(as.numeric,p_map)
@@ -34,7 +27,9 @@ S3method(bayesfactor_models,BFBayesFactor)
 S3method(bayesfactor_models,blavaan)
 S3method(bayesfactor_models,brmsfit)
 S3method(bayesfactor_models,default)
+S3method(bayesfactor_models,stanfit)
 S3method(bayesfactor_models,stanreg)
+S3method(bayesfactor_parameters,CmdStanFit)
 S3method(bayesfactor_parameters,bayesfactor_models)
 S3method(bayesfactor_parameters,blavaan)
 S3method(bayesfactor_parameters,brmsfit)
@@ -49,7 +44,9 @@ S3method(bayesfactor_parameters,rvar)
 S3method(bayesfactor_parameters,sim)
 S3method(bayesfactor_parameters,sim.merMod)
 S3method(bayesfactor_parameters,slopes)
+S3method(bayesfactor_parameters,stanfit)
 S3method(bayesfactor_parameters,stanreg)
+S3method(bayesfactor_restricted,CmdStanFit)
 S3method(bayesfactor_restricted,blavaan)
 S3method(bayesfactor_restricted,brmsfit)
 S3method(bayesfactor_restricted,comparisons)
@@ -60,9 +57,11 @@ S3method(bayesfactor_restricted,emm_list)
 S3method(bayesfactor_restricted,predictions)
 S3method(bayesfactor_restricted,rvar)
 S3method(bayesfactor_restricted,slopes)
+S3method(bayesfactor_restricted,stanfit)
 S3method(bayesfactor_restricted,stanreg)
 S3method(bci,BFBayesFactor)
 S3method(bci,BGGM)
+S3method(bci,CmdStanFit)
 S3method(bci,MCMCglmm)
 S3method(bci,bamlss)
 S3method(bci,bayesQR)
@@ -91,6 +90,7 @@ S3method(check_prior,brmsfit)
 S3method(check_prior,stanreg)
 S3method(ci,BFBayesFactor)
 S3method(ci,BGGM)
+S3method(ci,CmdStanFit)
 S3method(ci,MCMCglmm)
 S3method(ci,bamlss)
 S3method(ci,bcplm)
@@ -115,6 +115,7 @@ S3method(ci,stanfit)
 S3method(ci,stanreg)
 S3method(describe_posterior,BFBayesFactor)
 S3method(describe_posterior,BGGM)
+S3method(describe_posterior,CmdStanFit)
 S3method(describe_posterior,MCMCglmm)
 S3method(describe_posterior,bamlss)
 S3method(describe_posterior,bayesQR)
@@ -152,6 +153,7 @@ S3method(describe_prior,draws)
 S3method(describe_prior,rvar)
 S3method(describe_prior,stanreg)
 S3method(diagnostic_draws,brmsfit)
+S3method(diagnostic_posterior,CmdStanFit)
 S3method(diagnostic_posterior,blavaan)
 S3method(diagnostic_posterior,brmsfit)
 S3method(diagnostic_posterior,default)
@@ -172,6 +174,7 @@ S3method(display,p_map)
 S3method(display,p_rope)
 S3method(display,p_significance)
 S3method(display,point_estimate)
+S3method(effective_sample,CmdStanFit)
 S3method(effective_sample,MCMCglmm)
 S3method(effective_sample,blavaan)
 S3method(effective_sample,brmsfit)
@@ -180,6 +183,7 @@ S3method(effective_sample,stanfit)
 S3method(effective_sample,stanmvreg)
 S3method(effective_sample,stanreg)
 S3method(equivalence_test,BFBayesFactor)
+S3method(equivalence_test,CmdStanFit)
 S3method(equivalence_test,bamlss)
 S3method(equivalence_test,bayesQR)
 S3method(equivalence_test,bcplm)
@@ -203,6 +207,7 @@ S3method(equivalence_test,slopes)
 S3method(equivalence_test,stanfit)
 S3method(equivalence_test,stanreg)
 S3method(estimate_density,BGGM)
+S3method(estimate_density,CmdStanFit)
 S3method(estimate_density,MCMCglmm)
 S3method(estimate_density,bamlss)
 S3method(estimate_density,bayesQR)
@@ -228,6 +233,7 @@ S3method(estimate_density,stanfit)
 S3method(estimate_density,stanreg)
 S3method(eti,BFBayesFactor)
 S3method(eti,BGGM)
+S3method(eti,CmdStanFit)
 S3method(eti,MCMCglmm)
 S3method(eti,bamlss)
 S3method(eti,bayesQR)
@@ -270,6 +276,7 @@ S3method(format,point_estimate)
 S3method(format,rope)
 S3method(hdi,BFBayesFactor)
 S3method(hdi,BGGM)
+S3method(hdi,CmdStanFit)
 S3method(hdi,MCMCglmm)
 S3method(hdi,bamlss)
 S3method(hdi,bayesQR)
@@ -295,6 +302,7 @@ S3method(hdi,slopes)
 S3method(hdi,stanfit)
 S3method(hdi,stanreg)
 S3method(map_estimate,BGGM)
+S3method(map_estimate,CmdStanFit)
 S3method(map_estimate,bamlss)
 S3method(map_estimate,bayesQR)
 S3method(map_estimate,bcplm)
@@ -315,6 +323,7 @@ S3method(map_estimate,rvar)
 S3method(map_estimate,slopes)
 S3method(map_estimate,stanfit)
 S3method(map_estimate,stanreg)
+S3method(mcse,CmdStanFit)
 S3method(mcse,blavaan)
 S3method(mcse,brmsfit)
 S3method(mcse,stanfit)
@@ -324,6 +333,7 @@ S3method(mediation,stanmvreg)
 S3method(model_to_priors,brmsfit)
 S3method(p_direction,BFBayesFactor)
 S3method(p_direction,BGGM)
+S3method(p_direction,CmdStanFit)
 S3method(p_direction,MCMCglmm)
 S3method(p_direction,bamlss)
 S3method(p_direction,bayesQR)
@@ -351,6 +361,7 @@ S3method(p_direction,stanfit)
 S3method(p_direction,stanreg)
 S3method(p_map,BFBayesFactor)
 S3method(p_map,BGGM)
+S3method(p_map,CmdStanFit)
 S3method(p_map,MCMCglmm)
 S3method(p_map,bamlss)
 S3method(p_map,bayesQR)
@@ -376,6 +387,7 @@ S3method(p_map,stanfit)
 S3method(p_map,stanreg)
 S3method(p_rope,BFBayesFactor)
 S3method(p_rope,BGGM)
+S3method(p_rope,CmdStanFit)
 S3method(p_rope,MCMCglmm)
 S3method(p_rope,bamlss)
 S3method(p_rope,bcplm)
@@ -400,6 +412,7 @@ S3method(p_rope,stanfit)
 S3method(p_rope,stanreg)
 S3method(p_significance,BFBayesFactor)
 S3method(p_significance,BGGM)
+S3method(p_significance,CmdStanFit)
 S3method(p_significance,MCMCglmm)
 S3method(p_significance,bamlss)
 S3method(p_significance,bayesQR)
@@ -445,6 +458,7 @@ S3method(plot,point_estimate)
 S3method(plot,rope)
 S3method(point_estimate,BFBayesFactor)
 S3method(point_estimate,BGGM)
+S3method(point_estimate,CmdStanFit)
 S3method(point_estimate,MCMCglmm)
 S3method(point_estimate,bamlss)
 S3method(point_estimate,bayesQR)
@@ -521,6 +535,7 @@ S3method(print_md,p_significance)
 S3method(print_md,point_estimate)
 S3method(rope,BFBayesFactor)
 S3method(rope,BGGM)
+S3method(rope,CmdStanFit)
 S3method(rope,MCMCglmm)
 S3method(rope,bamlss)
 S3method(rope,bayesQR)
@@ -573,6 +588,7 @@ S3method(sexit_thresholds,mlm)
 S3method(sexit_thresholds,stanreg)
 S3method(sexit_thresholds,wbm)
 S3method(sexit_thresholds,zeroinfl)
+S3method(si,CmdStanFit)
 S3method(si,blavaan)
 S3method(si,brmsfit)
 S3method(si,comparisons)
@@ -593,6 +609,7 @@ S3method(simulate_prior,brmsfit)
 S3method(simulate_prior,stanreg)
 S3method(spi,BFBayesFactor)
 S3method(spi,BGGM)
+S3method(spi,CmdStanFit)
 S3method(spi,MCMCglmm)
 S3method(spi,bamlss)
 S3method(spi,bayesQR)

NEWS.md

@@ -4,6 +4,9 @@
 
 * `as.matrix()` for `bayesfactor_restricted()`, to obtain a matrix of Bayes 
   factors between all restricted models.
+* New dedicated docs for Bayes factor methods `?bayesfactor_methods`
+* Added support for `CmdStanFit` models from `{cmdstanr}` and expanded support for `stanfit` models from `rstan`.
+
 
 ## Changes