Fixing function %||% not being found #134
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grst
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Sep 6, 2021
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| #ifdef RCPP_USE_GLOBAL_ROSTREAM | ||
| Rcpp::Rostream<true>& Rcpp::Rcout = Rcpp::Rcpp_cout_get(); | ||
| Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get(); | ||
| #endif | ||
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Where does this change come from? Has it been added by roxygen?
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yes, it has. I am unsure whether it is necessary though
Update DESCRIPTION
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* update scib package name * fix batch variable check between integrated and nonintegraed adata * update environments to correct scib versions * using pip version of scib * fix R import issue for Harmony (as mentioned in immunogenomics/harmony#134) * use value counts to check for batch relabeling after integration
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When using harmony with the package CDSeq (https://github.com/kkang7/CDSeq_R_Package), I discovered that I always got this error:
This error will not be there if
library(rlang)is called before, but that can't always be guaranteed. The issue can be fixed by including an @importFrom for '%||%' and 'DefaultAssay' in the RunHarmony methods