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@krishnanlab

Krishnan Lab

Laboratory for Computational Genomics and Biomedical Data Science
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  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 169 24

  2. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 25 6

  3. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 19

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 22 1

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 20 3

  6. RNAseq_coexpression RNAseq_coexpression Public

    In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

    HTML 15 4

Repositories

Showing 10 of 36 repositories
  • PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    krishnanlab/PyGenePlexus’s past year of commit activity
    Python 20 3 1 2 Updated Oct 6, 2025
  • PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    krishnanlab/PecanPy’s past year of commit activity
    Python 169 BSD-3-Clause 24 16 (1 issue needs help) 8 Updated Oct 6, 2025
  • pydab Public

    A _blazingly fast_ Python package for modifying and converting DAB files

    krishnanlab/pydab’s past year of commit activity
    Python 3 MIT 0 3 6 Updated Oct 6, 2025
  • obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    krishnanlab/obnb’s past year of commit activity
    Python 22 MIT 1 60 7 Updated Oct 6, 2025
  • meta2onto Public

    Frontend and backend for the meta2onto project

    krishnanlab/meta2onto’s past year of commit activity
    TypeScript 0 0 0 0 Updated Oct 3, 2025
  • .github Public
    krishnanlab/.github’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 20 Updated Oct 1, 2025
  • teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    krishnanlab/teaching’s past year of commit activity
    Jupyter Notebook 23 MIT 19 0 0 Updated Sep 7, 2025
  • txt2onto_prediction_workflow Public

    txt2onto 2.0 text-based predictions

    krishnanlab/txt2onto_prediction_workflow’s past year of commit activity
    Jupyter Notebook 0 1 1 1 Updated Aug 15, 2025
  • multiomics-embedding Public
    krishnanlab/multiomics-embedding’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jul 23, 2025
  • geneplexus-app-v2 Public

    GenePlexus App - backend (cloud functions) and frontend

    krishnanlab/geneplexus-app-v2’s past year of commit activity
    TypeScript 2 0 4 0 Updated Apr 10, 2025
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