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Cleanup Makefile to respect users environment. #125

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Cleanup Makefile to respect users environment. #125

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12 changes: 8 additions & 4 deletions Makefile
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Original file line number Diff line number Diff line change
@@ -1,14 +1,18 @@
CC=gcc
CFLAGS=-g -Wall -O2 -Wno-unused-function
BINDIR=/usr/local/bin
CC ?= gcc
CFLAGS ?= -g -Wall -O2 -Wno-unused-function
PREFIX ?= /usr/local
BINDIR ?= $(DESTDIR)$(PREFIX)/bin
INSTALL ?= install
MKDIR ?= mkdir

all:seqtk

seqtk:seqtk.c khash.h kseq.h
$(CC) $(CFLAGS) seqtk.c -o $@ -lz -lm

install:all
install seqtk $(BINDIR)
$(MKDIR) -p $(BINDIR)
$(INSTALL) seqtk $(BINDIR)

clean:
rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session*