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Training Data for DynaCLR

Status: Open.

#380 In mehta-lab/VisCy;

· daemonkillerr opened on Mar 9, 2026

Write DynaCLR predictions before PHATE computations

Status: Open.

#369 In mehta-lab/VisCy;

· Soorya19Pradeep opened on Feb 17, 2026

Embedding writer caches everything before writing to disk causing OOM errors on OPS datasets

Status: Open.

#362 In mehta-lab/VisCy;

· edyoshikun opened on Feb 11, 2026

Fix normalization logic for per-timepoint transforms

package:transformsviscy-transforms packageviscy-transforms package

Status: Open.

Bug

#361 In mehta-lab/VisCy;

· srivarra opened on Feb 4, 2026

Modularize VisCy

breakingBreaking changesBreaking changes

maintenanceMaintenance workMaintenance work

Status: Open.

Task

#353 In mehta-lab/VisCy;

· srivarra opened on Jan 14, 2026

Standalone transforms library

Status: Open.

#348 In mehta-lab/VisCy;

· ziw-liu opened on Dec 10, 2025

DynaCLR patch selection is too restrictive for smaller FOVs and large patch sizes

enhancementNew feature or requestNew feature or request

Status: Open.

#338 In mehta-lab/VisCy;

· edyoshikun opened on Nov 5, 2025

Add integration tests for our DynaCLR pipline

CIContinuous integrationContinuous integration

enhancementNew feature or requestNew feature or request

Status: Open.

#333 In mehta-lab/VisCy;

· edyoshikun opened on Nov 3, 2025

Logging the model configs using save_hyperparms

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#302 In mehta-lab/VisCy;

· edyoshikun opened on Sep 17, 2025

·  

v0.4.1

PC viewer issues

bugSomething isn't workingSomething isn't working

representationRepresentation learning (SSL)Representation learning (SSL)

Status: Open.

#297 In mehta-lab/VisCy;

· Soorya19Pradeep opened on Sep 11, 2025

Update the DL Course Notebook based on 2025 feedback

documentationImprovements or additions to documentationImprovements or additions to documentation

translationImage translation (VS)Image translation (VS)

Status: Open.

#293 In mehta-lab/VisCy;

· edyoshikun opened on Sep 10, 2025

update to iohub and zarr v3

enhancementNew feature or requestNew feature or request

maintenanceMaintenance workMaintenance work

Status: Open.

#292 In mehta-lab/VisCy;

· edyoshikun opened on Sep 10, 2025

·  

v0.4.1