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@kheal kheal commented Oct 23, 2025

Adds orbitrap_exploris_120 as permissible value to InstrumentModelEnum, which is needed for the EcoFab LCMS Metabolomics data. Closes #2699

@kheal kheal linked an issue Oct 23, 2025 that may be closed by this pull request
@kheal kheal requested review from aclum and samobermiller October 23, 2025 20:32
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aclum commented Oct 23, 2025

Do you want to be more specific here? MassIVE says Orbitrap Exploris 120 which does have an exact mapping to the MS ontology? https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMS_1003095?lang=en

For the sequencing instrument permissible values I've done both, have a more generic permissive value for when the series information isn't known plus PVs for where it is (e.g., hiseq, hiseq_2000, etc)

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kheal commented Oct 23, 2025

@aclum good call, metadata on the raw files says it's from the 120 I'll update.

@kheal kheal changed the title Add orbitrap_exploris as permissible value to InstrumentModelEnum Add orbitrap_exploris_120 as permissible value to InstrumentModelEnum Oct 23, 2025
@kheal kheal marked this pull request as ready for review October 23, 2025 23:02
@kheal kheal self-assigned this Oct 23, 2025
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Looks spectacular

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kheal commented Oct 24, 2025

FYI @turbomam

@kheal kheal merged commit 18b7def into main Oct 24, 2025
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Add orbitrap_exploris as permissible value for InstrumentModel Enum

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