Add BISCUIT#186

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ekushele wants to merge 64 commits intonf-core:devfrom

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Commits on Mar 25, 2020

Added aligner-biscuit, with all relevant steps and parameters and update multiqc accordingly, added picard CollectInsertSizeMetrics and CollectGcBiasMetrics for all aligners, added Samtools sort fo…
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workflow files
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change docs: output.md and usage.md. Update CHANGELOG.md accordingly. Update enviroment.yml to newer version. Change main.nf slightly, on definision of publish output directory
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Commits on Apr 21, 2020

Commits on Apr 22, 2020

Commits on Apr 23, 2020

remove soloWCGW step
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Commits on Apr 28, 2020

remove swift
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Commits on Feb 8, 2021

Commits on Feb 10, 2021

Commits on Feb 14, 2021

added option blacklist
ekushele
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Commits on Feb 19, 2021

add try and catch in epiread_pairedEnd_convertion
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Commits on Feb 20, 2021

Commits on Feb 22, 2021

Commits on Mar 30, 2021

Commits on Apr 4, 2021

Commits on Jun 13, 2021

add optional to output section for epiread original file
ekushele
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