new module: vembrane

[famosab]

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

https://github.com/vembrane/vembrane

Possibly useful for nf-core/variantprioritization#30

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

We actually need three modules from this:

• vembrane/table
• vembrane/filter
• vembrane/sort

[mkatsanto]

Initialisation of the vembrane module in the nf-core modules

• create conda env containing nextflow and nf-core tools (conda install nf-core)
• check the https://github.com/nf-core/modules on how to contribute to the nf-core modules

Follow guide on how to create the nf-core module https://nf-co.re/docs/contributing/modules#writing-a-new-module-reference

• check that the module isn’t already on nf-core/modules : nf-core modules list remote returns no vembrane
• forked https://github.com/nf-core/modules.git
• docker pull quay.io/biocontainers/vembrane:2.4.0--pyhdfd78af_0
• conda image in bioconda https://bioconda.github.io/recipes/vembrane/README.html
• create the module template: https://nf-co.re/docs/contributing/modules#uploading-to-nf-coremodules nf-core modules create vembrane --author @trangdo-hsc --meta - new folder for the vembrane with template
• rules for the module: https://nf-co.re/docs/guidelines/components/modules

[mkatsanto]

Implementation of the vembrane table functionality: #9285