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Pull requests: nf-core/modules

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Pull requests list

fastavalidator topics migration
#10925 opened Mar 16, 2026 by EfraMP Loading…
6 of 17 tasks
1
Fix logic to accept singplex flex libraries in cellranger_multi
#10922 opened Mar 16, 2026 by delfiterradas Loading…
17 tasks
1
@delfiterradas
Update module mobster
#10921 opened Mar 16, 2026 by elena-buscaroli Loading…
8 tasks done
1
fix(purge_dups): re-add prefix to output file names
#10919 opened Mar 16, 2026 by prototaxites Loading…
2 of 17 tasks
Add new module: disambiguate Ready for Review
#10917 opened Mar 16, 2026 by ctuni Loading…
11 of 17 tasks
1
Add new module: saltshaker/classify
#10914 opened Mar 16, 2026 by ieduba Loading…
17 tasks
Add HDL h2 and rg modules
#10912 opened Mar 15, 2026 by lyh970817 • Draft
14 tasks done
Remove non-standard ext keys from jupyternotebook
#10895 opened Mar 13, 2026 by mahesh-panchal Loading…
17 tasks
Add variantextractor module
#10894 opened Mar 13, 2026 by sbreuch Loading…
11 of 14 tasks
1
1
Remove non-standard ext keys and model after quartonotebook Ready for Review
#10886 opened Mar 13, 2026 by mahesh-panchal Loading…
1 of 17 tasks
Migration to topics channels: diamond/blastp #10766
#10885 opened Mar 13, 2026 by LorenzoCampanelli1102 Loading…
16 tasks
1
8
Bamclipper topics migration
#10882 opened Mar 13, 2026 by santiagotariza Loading…
1
topic migration for deseq2 size/s
#10873 opened Mar 13, 2026 by lourdeslabrador Loading…
17 tasks
1
7
Migrate drep/compare module to topic channels
#10869 opened Mar 13, 2026 by ayirm • Draft
3 of 8 tasks
1
Add GCTA modules
#10863 opened Mar 13, 2026 by lyh970817 Loading…
14 of 17 tasks
13
Cnvpytor/partition topics migration
#10855 opened Mar 13, 2026 by gonzagrau Loading…
1
1
Dragen germline topics migration
#10853 opened Mar 13, 2026 by DogaTestere Loading…
3 of 8 tasks
1
5
Cnvpytor/importreaddepth
#10852 opened Mar 13, 2026 by daleor0917 Loading…
1
2
update doubletdetection topics channel size/s
#10850 opened Mar 13, 2026 by alanmmobbs93 • Draft
17 tasks
1
1
Migrate annosine to topic channels size/s
#10834 opened Mar 13, 2026 by garciafranciscomartn Loading…
1
3
update module: duphold
#10822 opened Mar 13, 2026 by camlloyd Loading…
3 of 17 tasks
1
2
Topic migration dedup
#10814 opened Mar 13, 2026 by isgenome Loading…
1 of 17 tasks
1
@isgenome
1
new module: stitchr
#10812 opened Mar 13, 2026 by Clara0611 Loading…
9 of 11 tasks
1
fix calder version
#10810 opened Mar 13, 2026 by carolineclbcq-fr Loading…
17 tasks
1
@carolineclbcq-fr
Add REGENIE step1 and step2 modules with Wave containers and expanded GWAS tests
#10800 opened Mar 13, 2026 by lyh970817 Loading…
14 tasks done
3
ProTip! Updated in the last three days: updated:>2026-03-13.