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Pull requests: nf-core/modules

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157 Open 6,689 Closed
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Pull requests list

Vcf vembrane
#9305 opened Oct 29, 2025 by trangdo-hsc Loading…
12 of 17 tasks
fix: gprofiler2 output files missing gene names in intersection columns #497 good first issue Good for newcomers
#9304 opened Oct 29, 2025 by mohe1linux Loading…
@mohe1linux
Fastq decontaminate deacon
#9302 opened Oct 29, 2025 by Baksic-Ivan Loading…
17 tasks
4
Prior cons buildpriors
#9300 opened Oct 29, 2025 by zhliUU Loading…
1 of 3 tasks
Add priorcons module [DRAFT]
#9299 opened Oct 29, 2025 by GERMAN00VP Loading…
12 of 17 tasks
Add pcgr/getref module
#9295 opened Oct 29, 2025 by famosab Loading…
17 tasks
1
feat: addition of vembrane sort module
#9294 opened Oct 29, 2025 by mkatsanto Loading…
12 of 13 tasks
1
@mkatsanto @trangdo-hsc
8
Add nf-co2footprint plugin for emissions tracking
#9293 opened Oct 29, 2025 by edmundmiller Loading…
4 tasks
1
@edmundmiller
Vembrane filter
#9290 opened Oct 29, 2025 by trangdo-hsc Loading…
12 of 17 tasks
@mkatsanto @trangdo-hsc
15
Add stub tests to kraken2/kraken2 nf-core module
#9289 opened Oct 29, 2025 by fischer-hub Loading…
11 of 17 tasks
1
Update Bracken to accept separate Kraken2 build files to prevent symlink in symlink issues
#9288 opened Oct 29, 2025 by jfy133 Loading…
17 tasks
1
Updated falint to 1.2.0
#9286 opened Oct 28, 2025 by GallVp Loading…
1 of 17 tasks
feat: addition of vembrane table module
#9285 opened Oct 28, 2025 by mkatsanto Loading…
11 of 14 tasks
@mkatsanto @trangdo-hsc
22
trim_galore version
#9276 opened Oct 28, 2025 by yadavbha Loading…
17 tasks
4
Add Autocycler subtool modules (subsample, compress, cluster, trim, resolve, combine)
#9274 opened Oct 28, 2025 by dwells-eit Loading…
11 of 13 tasks
1
14
update module: vcf2zarr/convert
#9270 opened Oct 28, 2025 by camlloyd Loading…
2 of 17 tasks
1
1
update module: bioformats2raw
#9256 opened Oct 27, 2025 by camlloyd Loading…
1 of 17 tasks
1
Allow non-count data in DREAM
#9254 opened Oct 27, 2025 by delfiterradas • Draft
17 tasks
1
@delfiterradas
Add picrust2/pipeline module Ready for Review
#9218 opened Oct 21, 2025 by dialvarezs Loading…
11 of 17 tasks
13
New module: Ribodetector new module Adding a new module Ready for Review
#9209 opened Oct 17, 2025 by maxibor Loading…
10 tasks done
15
🔧 update image and bioconda container for VueGen to latest version
#9201 opened Oct 16, 2025 by enryH Loading…
21
New align dedup bwamem
#9197 opened Oct 15, 2025 by eduard-watchmaker Loading…
17 tasks
54
EBI MGnify - ENA Genome uploader
#9177 opened Oct 8, 2025 by mberacochea • Draft
17 tasks
15
adding homer merge peaks, and a peakcalling workflow
#9172 opened Oct 5, 2025 by cmatKhan Loading…
4
Hificnv—copy-number variant caller for PacBio HiFi long-read data new module Adding a new module Ready for Review
#9165 opened Oct 2, 2025 by chaochaowong Loading…
14 tasks done
@chaochaowong
4
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