Skip to content

Add HDL h2 and rg modules#10912

Draft
lyh970817 wants to merge 1 commit intonf-core:masterfrom
lyh970817:modules/hdl-create
Draft

Add HDL h2 and rg modules#10912
lyh970817 wants to merge 1 commit intonf-core:masterfrom
lyh970817:modules/hdl-create

Conversation

@lyh970817
Copy link

@lyh970817 lyh970817 commented Mar 15, 2026

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda

HDL estimates SNP heritability and pairwise genetic correlation from GWAS summary statistics.
This PR upstreams hdl/h2 and hdl/rg together so nf-core/modules covers both HDL entry points with their shared reference-panel input contract.

The required shared HDL fixtures are provided in the companion nf-core/test-datasets PR: nf-core/test-datasets#1932

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant