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obophenotype

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  1. human-phenotype-ontology human-phenotype-ontology Public

    Ontology for the description of human clinical features

    Makefile 327 56

  2. cell-ontology cell-ontology Public

    An ontology of cell types

    Makefile 184 54

  3. uberon uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 146 33

  4. upheno upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    Jupyter Notebook 82 20

  5. ncbitaxon ncbitaxon Public

    Build for NCBITaxon

    Python 30 7

  6. bio-attribute-ontology bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    Jupyter Notebook 27 12

Repositories

Showing 10 of 64 repositories
  • cell-ontology Public

    An ontology of cell types

    obophenotype/cell-ontology’s past year of commit activity
    Makefile 184 CC-BY-4.0 54 302 30 Updated Dec 3, 2025
  • human-phenotype-ontology Public

    Ontology for the description of human clinical features

    obophenotype/human-phenotype-ontology’s past year of commit activity
    Makefile 327 56 98 6 Updated Dec 1, 2025
  • uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    obophenotype/uberon’s past year of commit activity
    Emacs Lisp 146 33 304 (2 issues need help) 38 Updated Dec 1, 2025
  • upheno Public

    The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.

    obophenotype/upheno’s past year of commit activity
    Jupyter Notebook 82 CC0-1.0 20 270 (5 issues need help) 21 Updated Nov 26, 2025
  • pro_obo_slim Public

    A repo to generate a pro slim for the OBO phenotype organisation

    obophenotype/pro_obo_slim’s past year of commit activity
    Makefile 1 1 0 1 Updated Nov 25, 2025
  • bio-attribute-ontology Public

    source files for OBA (Ontology of Biological Attributes)

    obophenotype/bio-attribute-ontology’s past year of commit activity
    Jupyter Notebook 27 CC0-1.0 12 90 11 Updated Nov 14, 2025
  • ascomycete-phenotype-ontology Public
    obophenotype/ascomycete-phenotype-ontology’s past year of commit activity
    Shell 4 CC-BY-4.0 5 1 0 Updated Nov 10, 2025
  • ncbitaxon Public

    Build for NCBITaxon

    obophenotype/ncbitaxon’s past year of commit activity
    Python 30 BSD-3-Clause 7 27 1 Updated Oct 13, 2025
  • chebi_obo_slim Public

    A slimmed down version of CHEBI sufficient to cover 99% of the term needs across OBO ontologies

    obophenotype/chebi_obo_slim’s past year of commit activity
    Ruby 3 1 4 2 Updated Oct 11, 2025
  • c-elegans-gross-anatomy-ontology Public

    C. elegans Gross Anatomy Ontology

    obophenotype/c-elegans-gross-anatomy-ontology’s past year of commit activity
    Makefile 7 CC-BY-4.0 2 6 0 Updated Aug 19, 2025
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