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    • zebra_day

      Public
      Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
      Python
      GNU General Public License v3.0
      31640Updated Apr 17, 2026Apr 17, 2026
    • daylily-ursa

      Public
      Daylily ephemeral cluster automated analysis workset manager.
      Python
      0020Updated Apr 17, 2026Apr 17, 2026
    • bloom

      Public
      Templated Abstract Polymorphic (and opinionated) LIMS
      PLpgSQL
      Mozilla Public License 2.0
      12300Updated Apr 17, 2026Apr 17, 2026
    • dewey

      Public
      File management!
      Python
      MIT License
      0030Updated Apr 17, 2026Apr 17, 2026
    • Python
      MIT License
      0061Updated Apr 17, 2026Apr 17, 2026
    • daylily-auth-cognito

      Public
      Share cognito library to generalize sso functionality for fastapi+jinja 2 based web apps.
      Python
      MIT License
      0031Updated Apr 16, 2026Apr 16, 2026
    • A pluggable command line cli library for bash and zsh shells
      Python
      MIT License
      0011Updated Apr 16, 2026Apr 16, 2026
    • (current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m…
      Python
      GNU General Public License v3.0
      323310Updated Apr 15, 2026Apr 15, 2026
    • (current) Comprehensive WGS omics analysis pipeline ( reads to variants & QC ) : Sequence Platforms ( Illumina, PacBio, ONT, Ultima, Roche )
      Python
      GNU General Public License v3.0
      1320Updated Apr 15, 2026Apr 15, 2026
    • marvain

      Public
      Python
      0000Updated Apr 13, 2026Apr 13, 2026
    • Simple Mac app to track active time, by active window time, of your work. With simple gui and local data store.
      Swift
      MIT License
      0010Updated Apr 3, 2026Apr 3, 2026
    • metapub

      Public
      Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
      Python
      Apache License 2.0
      31000Updated Apr 3, 2026Apr 3, 2026
    • Homebrew tap for Daylily Informatics tools
      Ruby
      0000Updated Apr 3, 2026Apr 3, 2026
    • Python Module Interfacing w/The FedEx Tracking API
      Python
      MIT License
      0400Updated Apr 3, 2026Apr 3, 2026
    • The code which manages the reference bucket(s) utilized by daylily-omics-analysis and other bioinformatics analyses repos supported to run on daylily-ephemeral-…
      Python
      MIT License
      0002Updated Apr 3, 2026Apr 3, 2026
    • Library that takes shipment carrier tracking numbers and returns standardized info for use in operational systems intetgrating with carriers. Enabled: FedEx, U…
      Python
      MIT License
      0000Updated Apr 3, 2026Apr 3, 2026
    • snakemake

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      HTML
      MIT License
      633000Updated Feb 11, 2026Feb 11, 2026
    • Slim fastapi / jinja2 web application to expose metapub command line functionality.
      Python
      MIT License
      0000Updated Jan 30, 2026Jan 30, 2026
    • UltraQC

      Public
      Web application to collect and visualise data across multiple MultiQC runs.
      HTML
      GNU General Public License v3.0
      29000Updated Dec 25, 2025Dec 25, 2025
    • Python
      MIT License
      0001Updated Dec 15, 2025Dec 15, 2025
    • Ai companion
      Python
      00013Updated Dec 15, 2025Dec 15, 2025
    • HTML
      MIT License
      0000Updated Dec 3, 2025Dec 3, 2025
    • slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
      Python
      MIT License
      0100Updated Dec 3, 2025Dec 3, 2025
    • Playing around with merging images taken of the outside of a tube.
      Python
      MIT License
      0100Updated Dec 3, 2025Dec 3, 2025
    • RNA-seq workflow using STAR and DESeq2
      Python
      MIT License
      2101011Updated Dec 3, 2025Dec 3, 2025
    • (current)
      TypeScript
      Apache License 2.0
      25000Updated Nov 25, 2025Nov 25, 2025
    • Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      MIT License
      526100Updated Oct 15, 2025Oct 15, 2025
    • hap-eval

      Public
      A VCF comparison engine for structual variant benchmarking
      Python
      BSD 2-Clause "Simplified" License
      4000Updated Sep 26, 2025Sep 26, 2025
    • Star aligner RSEM processing of rnaseq data.
      Python
      MIT License
      0000Updated Sep 26, 2025Sep 26, 2025
    • This is the development home of the workflow management system Snakemake. For general information, see
      Python
      MIT License
      633000Updated Sep 26, 2025Sep 26, 2025
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