Repositories list

• docker-ubuntu-hbase

  Public
  Dockerfile for running HBase on Ubuntu

  Apache License 2.0

  •55 forks•77 stars•66 issues•11 pull request•Updated Feb 18, 2020Feb 18, 2020

• bdg-formats

  Public
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

  Shell

  •

  Apache License 2.0

  •3535 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2016Nov 6, 2016

• optithera-scripts

  Public
  Various scripts developed for the Opti-Thera project at the CRCHUM

  Java

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2016May 6, 2016

• docker-ubuntu-adam

  Public
  (Genomics) Dockerfile for running Adam - http://bdgenomics.org

  Apache License 2.0

  •33 forks•44 stars•33 issues•00 pull requests•Updated Feb 12, 2016Feb 12, 2016

• 1kg-metadata

  Public
  1000 Genome Project Metadata

  JavaScript

  •

  Apache License 2.0

  •00 forks•00 stars•77 issues•00 pull requests•Updated Jan 16, 2016Jan 16, 2016

• adam-ibs

  Public
  Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM

  Scala

  •

  Apache License 2.0

  •66 forks•33 stars•2828 issues•00 pull requests•Updated Nov 9, 2015Nov 9, 2015

• variantminer

  Public
  A web UI over genomic data

  Scala

  •

  Apache License 2.0

  •11 fork•00 stars•1414 issues•00 pull requests•Updated Oct 28, 2015Oct 28, 2015

• sample-hbase-app

  Public
  Sample Java application that communicates with HBase via the HBase API.

  Java

  •

  Apache License 2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Oct 6, 2015Oct 6, 2015

• genomic-projects

  Public
  Repository for all Genomic Projects

  Ruby

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2015Sep 18, 2015

• adamcloud

  Public
  Portable cloud infrastructure for a genomic transformation pipeline using Adam

  Python

  •00 forks•11 star•1010 issues•00 pull requests•Updated Jul 23, 2015Jul 23, 2015

• example-avro-parquet-spark

  Public
  Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'…

  Scala

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 24, 2015Jun 24, 2015

• plink-ng

  Public
  A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvem…

  C

  •

  GNU General Public License v3.0

  •146146 forks•00 stars•00 issues•00 pull requests•Updated May 13, 2015May 13, 2015

• docker-ubuntu-avocado

  Public
  (Genomics) Dockerfile for running Avocado - http://bdgenomics.org

  Apache License 2.0

  •11 fork•00 stars•22 issues•00 pull requests•Updated Apr 14, 2015Apr 14, 2015

• plink

  Public
  (Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/

  C++

  •

  GNU General Public License v2.0

  •44 forks•55 stars•11 issue•00 pull requests•Updated Apr 14, 2015Apr 14, 2015

• docker-ubuntu-java

  Public
  Java Dockerfile for trusted automated Docker builds.

  MIT License

  •514514 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2015Apr 11, 2015

• mononews-backend

  Public
  Backend of the Mononews application: www.mononews.ca

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2015Mar 11, 2015

• docker-ubuntu-scala

  Public
  Dockerfile for running Scala on Ubuntu

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2015Mar 1, 2015

• docker-ubuntu-snap

  Public
  (Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2015Mar 1, 2015

• avocado

  Public
  A Variant Caller, Distributed. Apache 2 licensed.

  Scala

  •

  Other

  •4141 forks•00 stars•00 issues•00 pull requests•Updated Feb 20, 2015Feb 20, 2015

• adam

  Public
  A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

  Scala

  •

  Other

  •314314 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2015Feb 18, 2015