Repositories list

• do-dd-client

  Public

  deeporiginbio/do-dd-client’s past year of commit activity
  Deep Origin CLI and Python client

  pythoncommand-linelife-sciences+ 2sciopsdeep-origin

  Python

  •

  MIT License

  •1•12•0•1•Updated Jan 5, 2026Jan 5, 2026

• platform-ufa-client-tiny

  Public
  A tiny UFA client to use within Functions

  Python

  •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• rnd-agent-deepknowledge-pubmed-parser

  Public
  📋 A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

  Python

  •

  MIT License

  •177•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• do-events-challenge2025

  Public
  Python

  •1•2•0•0•Updated Apr 28, 2025Apr 28, 2025

• do-publications-deep-thought

  Public
  0•6•0•0•Updated Apr 27, 2025Apr 27, 2025

• do-publications-smartdatafactory-experiments

  Public
  Source code for Smart Distributed Data Factory ML models (see preprint. https://www.biorxiv.org/content/10.1101/2024.10.22.619651v2)

  Python

  •

  MIT License

  •1•2•0•10•Updated Mar 10, 2025Mar 10, 2025

• usr-brian-fork-mathjs

  Public archive
  An extensive math library for JavaScript and Node.js

  JavaScript

  •

  Apache License 2.0

  •1.3k•0•0•5•Updated Oct 11, 2024Oct 11, 2024

• do-tools-snakemake-executor-plugin

  Public archive
  A snakemake executor plugin for submission of jobs to Deeporigin

  Python

  •

  MIT License

  •12•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• do-tools-dna-seq-varlociraptor

  Public archive
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

  Python

  •

  MIT License

  •45•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• do-tools-snakemake-storage-plugin

  Public archive
  A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

  Python

  •

  MIT License

  •16•0•0•1•Updated Jun 14, 2024Jun 14, 2024

• do-tools-rna-seq-star-deseq2

  Public archive
  RNA-seq workflow using STAR and DESeq2

  Python

  •

  MIT License

  •211•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• .github

  Public
  Public profile of Formic Labs

  0•1•0•0•Updated May 31, 2024May 31, 2024

• do-fork-stag-mwc

  Public archive
  StaG Metagenomic Workflow Collaboration

  Python

  •

  MIT License

  •13•0•0•0•Updated May 1, 2024May 1, 2024

• do-fork-nf-shardold1

  Public archive
  Nextflow runs monitoring and organisation UI

  TypeScript

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  MIT License

  •13•0•0•0•Updated Feb 1, 2024Feb 1, 2024

• do-fork-d2vm

  Public archive
  Build Virtual Machine Image from Dockerfile or Docker image

  Go

  •

  Apache License 2.0

  •55•0•0•0•Updated Feb 15, 2023Feb 15, 2023

• do-fork-docker-to-linux

  Public archive
  Make bootable Linux disk image abusing Docker

  Makefile

  •97•0•0•0•Updated Jan 2, 2023Jan 2, 2023