Add UKACM & GACM tutorial: Quantifying Uncertainty due to heterogeneous material fields

.github/workflows/build_documentation.yml

@@ -51,6 +51,7 @@ jobs:
       - name: Sphinx build
         env:
           PYTHON_PACKAGE_MANAGER: ${{steps.environment.outputs.ppm}}
+          PYTHONPATH: ${{ github.workspace }}
         run: |
           set -euxo pipefail
           $PYTHON_PACKAGE_MANAGER activate queens

tests/input_files/third_party/fourc/coarse_plate_dirichlet_template.4C.yaml

@@ -5,11 +5,13 @@ PROBLEM TYPE:
   PROBLEMTYPE: "Structure"
 IO:
   OUTPUT_SPRING: true
+  STRUCT_STRESS: Cauchy
 IO/RUNTIME VTK OUTPUT:
   INTERVAL_STEPS: 1
 IO/RUNTIME VTK OUTPUT/STRUCTURE:
   OUTPUT_STRUCTURE: true
   DISPLACEMENT: true
+  STRESS_STRAIN: true
 STRUCTURAL DYNAMIC:
   INT_STRATEGY: "Standard"
   RESEVERYERGY: 1

tutorials/3_orchestrating_4c_simulations/3_orchestrating_4c_simulations.ipynb

@@ -60,7 +60,7 @@
    "source": [
     "# Define some paths\n",
     "from pathlib import Path\n",
-    "from utils import find_repo_root\n",
+    "from tutorials.utils import find_repo_root\n",
     "\n",
     "home = Path.home()\n",
     "NOTEBOOK_DIR = Path.cwd()\n",
@@ -277,7 +277,7 @@
    "source": [
     "# This is just needed for some nice plots\n",
     "\n",
-    "from utils import plot_results\n",
+    "from plot_results import plot_results\n",
     "if pyvista_available:\n",
     "    plotter = pv.Plotter()\n",
     "    plot_results(\n",

tutorials/3_orchestrating_4c_simulations/experimental_data.py

@@ -12,7 +12,7 @@
 # should have received a copy of the GNU Lesser General Public License along with QUEENS. If not,
 # see <https://www.gnu.org/licenses/>.
 #
-"""Data for tutorial 4."""
+"""Data for tutorial 3."""
 import numpy as np
 
 experimental_elementwise_cauchy_stress = np.array(

tutorials/3_orchestrating_4c_simulations/utils.py → tutorials/3_orchestrating_4c_simulations/plot_results.py

@@ -12,9 +12,8 @@
 # should have received a copy of the GNU Lesser General Public License along with QUEENS. If not,
 # see <https://www.gnu.org/licenses/>.
 #
-"""Utility functions for tutorial 4."""
+"""Plotting functions for tutorial 3."""
 import os
-from pathlib import Path
 
 os.environ["PYVISTA_OFF_SCREEN"] = "true"
 os.environ["VTK_DEFAULT_RENDER_WINDOW_OFFSCREEN"] = "1"
@@ -55,18 +54,3 @@ def plot_results(
         (0.0, 0.0, 0.2749999999999999),
         (-0.97637930372977, -0.08995062285804697, 0.19644933366041056),
     ]
-
-
-def find_repo_root(start: Path) -> Path:
-    """Find the repository root by going upwards from a starting directory.
-
-    Args:
-        start (Path): Starting directory to begin the upward search.
-
-    Returns:
-        Path: Path to the detected repository root (containing ``pyproject.toml``).
-    """
-    for p in [start, *start.parents]:
-        if (p / "pyproject.toml").exists():
-            return p
-    raise RuntimeError(f"Could not find repo root from {start}")