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Pull request overview
This PR adds metadata for five new packages to the scverse ecosystem: scPRINT-2 (a next-generation single cell foundation model), scPRINT (the original single cell foundation model), scDataLoader (a dataloader for large single cell databases), benGRN (a benchmarking tool for gene network inference), and GRnnData (an AnnData extension for gene networks). All packages are authored by jkobject (Jeremie Kalfon) and follow the required meta.yaml schema format.
- Added scPRINT-2 package metadata with GPL-3.0-or-later license
- Added four supporting packages (scPRINT, scDataLoader, benGRN, GRnnData) all with MIT license
- All packages include standard fields: project home, documentation, publications, installation instructions, tags, version, and test commands
Reviewed changes
Copilot reviewed 5 out of 5 changed files in this pull request and generated 3 comments.
Show a summary per file
| File | Description |
|---|---|
| packages/scPRINT-2/meta.yaml | Adds metadata for the next-generation scPRINT foundation model with additional features like species integration and counterfactual predictions |
| packages/scPRINT/meta.yaml | Adds metadata for the original scPRINT foundation model focused on gene network inference |
| packages/scDataLoader/meta.yaml | Adds metadata for a dataloader supporting weighted random sampling from large single cell databases |
| packages/benGRN/meta.yaml | Adds metadata for a gene network inference benchmarking tool using biological ground truth networks |
| packages/GRnnData/meta.yaml | Adds metadata for an AnnData extension providing utilities for working with gene networks |
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Updated authors section to include contact information.
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
| version: v1.2.1 | ||
| contact: | ||
| - jkobject | ||
| - jkobject (jeremie kalfon) |
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CI fails because usernames are now validated against the github api:
[03/21/26 19:13:03] ERROR ERROR:ecosystem_scripts._logging:Validation error: GRnnData: Failed to validate GitHub users validate_registry.py:48
['jkobject (jeremie kalfon)']:
- Could not resolve to a User with the login of 'jkobject (jeremie kalfon)'.
Please use plain github user IDs
No description provided.