[bot] update/containers-2025-06-19

quay.io/biocontainers/cram-archiver/container.yaml

@@ -0,0 +1,38 @@
+url: https://biocontainers.pro/tools/cram-archiver
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for cram-archiver
+latest:
+  1.0.0--pyhdfd78af_0: 
+    sha256:868f5a91d295ff26f84af74f70faa53b808401aae12a8ffeea04d1945ba817eb
+tags:
+  1.0.0--pyhdfd78af_0: 
+    sha256:868f5a91d295ff26f84af74f70faa53b808401aae12a8ffeea04d1945ba817eb
+docker: quay.io/biocontainers/cram-archiver
+aliases:
+  cram-archiver: /usr/local/bin/cram-archiver
+  ref-cache: /usr/local/bin/ref-cache
+  annot-tsv: /usr/local/bin/annot-tsv
+  idle3.13: /usr/local/bin/idle3.13
+  pydoc3.13: /usr/local/bin/pydoc3.13
+  python3.13: /usr/local/bin/python3.13
+  python3.13-config: /usr/local/bin/python3.13-config
+  fasta-sanitize.pl: /usr/local/bin/fasta-sanitize.pl
+  plot-ampliconstats: /usr/local/bin/plot-ampliconstats
+  ace2sam: /usr/local/bin/ace2sam
+  blast2sam.pl: /usr/local/bin/blast2sam.pl
+  bowtie2sam.pl: /usr/local/bin/bowtie2sam.pl
+  export2sam.pl: /usr/local/bin/export2sam.pl
+  interpolate_sam.pl: /usr/local/bin/interpolate_sam.pl
+  maq2sam-long: /usr/local/bin/maq2sam-long
+  maq2sam-short: /usr/local/bin/maq2sam-short
+  md5fa: /usr/local/bin/md5fa
+  md5sum-lite: /usr/local/bin/md5sum-lite
+  plot-bamstats: /usr/local/bin/plot-bamstats
+  psl2sam.pl: /usr/local/bin/psl2sam.pl
+  sam2vcf.pl: /usr/local/bin/sam2vcf.pl
+  samtools.pl: /usr/local/bin/samtools.pl
+  seq_cache_populate.pl: /usr/local/bin/seq_cache_populate.pl
+  soap2sam.pl: /usr/local/bin/soap2sam.pl
+  zoom2sam.pl: /usr/local/bin/zoom2sam.pl
+  novo2sam.pl: /usr/local/bin/novo2sam.pl
+  wgsim: /usr/local/bin/wgsim

quay.io/biocontainers/drhip/container.yaml

@@ -0,0 +1,17 @@
+url: https://biocontainers.pro/tools/drhip
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for drhip
+latest:
+  0.1.1--pyhdfd78af_0: 
+    sha256:c6f2385ce2d8e1f465b1727c719c7165851a22d3dd32d6e7692fcfb7a0751763
+tags:
+  0.1.1--pyhdfd78af_0: 
+    sha256:c6f2385ce2d8e1f465b1727c719c7165851a22d3dd32d6e7692fcfb7a0751763
+docker: quay.io/biocontainers/drhip
+aliases:
+  drhip: /usr/local/bin/drhip
+  idle3.13: /usr/local/bin/idle3.13
+  pydoc3.13: /usr/local/bin/pydoc3.13
+  python3.13: /usr/local/bin/python3.13
+  python3.13-config: /usr/local/bin/python3.13-config
+  numpy-config: /usr/local/bin/numpy-config

quay.io/biocontainers/edentity/container.yaml

@@ -0,0 +1,39 @@
+url: https://biocontainers.pro/tools/edentity
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for edentity
+latest:
+  1.4.5--pyhdfd78af_0: 
+    sha256:2bf030733462c8a9cf6a41bd71e796751fcbfa1066c947a9b49fb28c6679cfbf
+tags:
+  1.4.5--pyhdfd78af_0: 
+    sha256:2bf030733462c8a9cf6a41bd71e796751fcbfa1066c947a9b49fb28c6679cfbf
+docker: quay.io/biocontainers/edentity
+aliases:
+  edentity: /usr/local/bin/edentity
+  phc: /usr/local/bin/phc
+  plotly_get_chrome: /usr/local/bin/plotly_get_chrome
+  dotenv: /usr/local/bin/dotenv
+  typer: /usr/local/bin/typer
+  eido: /usr/local/bin/eido
+  kaleido: /usr/local/bin/kaleido
+  mathjax-path: /usr/local/bin/mathjax-path
+  multiqc: /usr/local/bin/multiqc
+  rich-click: /usr/local/bin/rich-click
+  rst2html: /usr/local/bin/rst2html
+  rst2html4: /usr/local/bin/rst2html4
+  rst2html5: /usr/local/bin/rst2html5
+  rst2latex: /usr/local/bin/rst2latex
+  rst2man: /usr/local/bin/rst2man
+  rst2odt: /usr/local/bin/rst2odt
+  rst2pseudoxml: /usr/local/bin/rst2pseudoxml
+  rst2s5: /usr/local/bin/rst2s5
+  rst2xetex: /usr/local/bin/rst2xetex
+  rst2xml: /usr/local/bin/rst2xml
+  fastp: /usr/local/bin/fastp
+  vsearch: /usr/local/bin/vsearch
+  cutadapt: /usr/local/bin/cutadapt
+  yte: /usr/local/bin/yte
+  plac_runner.py: /usr/local/bin/plac_runner.py
+  coloredlogs: /usr/local/bin/coloredlogs
+  pbunzip2: /usr/local/bin/pbunzip2
+  pbzcat: /usr/local/bin/pbzcat

quay.io/biocontainers/galaxy-job-execution/container.yaml

@@ -0,0 +1,82 @@
+url: https://biocontainers.pro/tools/galaxy-job-execution
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for 
+  galaxy-job-execution
+latest:
+  24.2.4--pyhdfd78af_0: 
+    sha256:dab643515ffdf586dfa4785710876ac5be4ba325d3a21edb65ac507314e37fb9
+tags:
+  24.2.4--pyhdfd78af_0: 
+    sha256:dab643515ffdf586dfa4785710876ac5be4ba325d3a21edb65ac507314e37fb9
+docker: quay.io/biocontainers/galaxy-job-execution
+aliases:
+  bagit.py: /usr/local/bin/bagit.py
+  bagit_profile.py: /usr/local/bin/bagit_profile.py
+  bdbag: /usr/local/bin/bdbag
+  bdbag-utils: /usr/local/bin/bdbag-utils
+  email_validator: /usr/local/bin/email_validator
+  flu: /usr/local/bin/flu
+  flu_precommit: /usr/local/bin/flu_precommit
+  galaxy-build-objects: /usr/local/bin/galaxy-build-objects
+  galaxy-container-monitor: /usr/local/bin/galaxy-container-monitor
+  galaxy-load-objects: /usr/local/bin/galaxy-load-objects
+  galaxy-manage-db: /usr/local/bin/galaxy-manage-db
+  galaxy-prune-histories: /usr/local/bin/galaxy-prune-histories
+  galaxy-set-metadata: /usr/local/bin/galaxy-set-metadata
+  galaxy-tool-test: /usr/local/bin/galaxy-tool-test
+  galaxy-tool-test-case-validation: 
+    /usr/local/bin/galaxy-tool-test-case-validation
+  galaxy-tool-upgrade-advisor: /usr/local/bin/galaxy-tool-upgrade-advisor
+  gx-fastq-combiner: /usr/local/bin/gx-fastq-combiner
+  gx-fastq-filter: /usr/local/bin/gx-fastq-filter
+  gx-fastq-groomer: /usr/local/bin/gx-fastq-groomer
+  gx-fastq-manipulation: /usr/local/bin/gx-fastq-manipulation
+  gx-fastq-masker-by-quality: /usr/local/bin/gx-fastq-masker-by-quality
+  gx-fastq-paired-end-deinterlacer: 
+    /usr/local/bin/gx-fastq-paired-end-deinterlacer
+  gx-fastq-paired-end-interlacer: /usr/local/bin/gx-fastq-paired-end-interlacer
+  gx-fastq-paired-end-joiner: /usr/local/bin/gx-fastq-paired-end-joiner
+  gx-fastq-paired-end-splitter: /usr/local/bin/gx-fastq-paired-end-splitter
+  gx-fastq-stats: /usr/local/bin/gx-fastq-stats
+  gx-fastq-to-fasta: /usr/local/bin/gx-fastq-to-fasta
+  gx-fastq-to-tabular: /usr/local/bin/gx-fastq-to-tabular
+  gx-fastq-trimmer: /usr/local/bin/gx-fastq-trimmer
+  gx-fastq-trimmer-by-quality: /usr/local/bin/gx-fastq-trimmer-by-quality
+  mrcfile-header: /usr/local/bin/mrcfile-header
+  mrcfile-validate: /usr/local/bin/mrcfile-validate
+  mulled-build: /usr/local/bin/mulled-build
+  mulled-build-channel: /usr/local/bin/mulled-build-channel
+  mulled-build-files: /usr/local/bin/mulled-build-files
+  mulled-build-tool: /usr/local/bin/mulled-build-tool
+  mulled-hash: /usr/local/bin/mulled-hash
+  mulled-list: /usr/local/bin/mulled-list
+  mulled-search: /usr/local/bin/mulled-search
+  mulled-update-singularity-containers: 
+    /usr/local/bin/mulled-update-singularity-containers
+  rocrate: /usr/local/bin/rocrate
+  validate-test-format: /usr/local/bin/validate-test-format
+  alembic: /usr/local/bin/alembic
+  cheetah: /usr/local/bin/cheetah
+  cheetah-analyze: /usr/local/bin/cheetah-analyze
+  cheetah-compile: /usr/local/bin/cheetah-compile
+  h5fuse: /usr/local/bin/h5fuse
+  rst2html: /usr/local/bin/rst2html
+  rst2html4: /usr/local/bin/rst2html4
+  rst2html5: /usr/local/bin/rst2html5
+  rst2latex: /usr/local/bin/rst2latex
+  rst2man: /usr/local/bin/rst2man
+  rst2odt: /usr/local/bin/rst2odt
+  rst2pseudoxml: /usr/local/bin/rst2pseudoxml
+  rst2s5: /usr/local/bin/rst2s5
+  rst2xetex: /usr/local/bin/rst2xetex
+  rst2xml: /usr/local/bin/rst2xml
+  tiff2fsspec: /usr/local/bin/tiff2fsspec
+  tiffcomment: /usr/local/bin/tiffcomment
+  mako-render: /usr/local/bin/mako-render
+  SvtAv1EncApp: /usr/local/bin/SvtAv1EncApp
+  cbrunsli: /usr/local/bin/cbrunsli
+  dbrunsli: /usr/local/bin/dbrunsli
+  imagecodecs: /usr/local/bin/imagecodecs
+  zfp: /usr/local/bin/zfp
+  zopfli: /usr/local/bin/zopfli
+  zopflipng: /usr/local/bin/zopflipng

quay.io/biocontainers/grzctl/container.yaml

@@ -0,0 +1,29 @@
+url: https://biocontainers.pro/tools/grzctl
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for grzctl
+latest:
+  0.1.0--pyhdfd78af_0: 
+    sha256:a9a6307776305d81b2b511b80066ce6441297210ebf67e7c7dbe95539fa24296
+tags:
+  0.1.0--pyhdfd78af_0: 
+    sha256:a9a6307776305d81b2b511b80066ce6441297210ebf67e7c7dbe95539fa24296
+docker: quay.io/biocontainers/grzctl
+aliases:
+  crypt4gh: /usr/local/bin/crypt4gh
+  crypt4gh-keygen: /usr/local/bin/crypt4gh-keygen
+  grz-cli: /usr/local/bin/grz-cli
+  grzctl: /usr/local/bin/grzctl
+  alembic: /usr/local/bin/alembic
+  dotenv: /usr/local/bin/dotenv
+  mako-render: /usr/local/bin/mako-render
+  markdown-it: /usr/local/bin/markdown-it
+  jp.py: /usr/local/bin/jp.py
+  jsonschema: /usr/local/bin/jsonschema
+  pygmentize: /usr/local/bin/pygmentize
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config
+  tqdm: /usr/local/bin/tqdm
+  normalizer: /usr/local/bin/normalizer

quay.io/biocontainers/haphic/container.yaml

@@ -0,0 +1,56 @@
+url: https://biocontainers.pro/tools/haphic
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for haphic
+latest:
+  1.0.7--hdfd78af_0: 
+    sha256:5f0640f1344f15d702233f5e0d247385914593f6e756af070923dcc5e9d5345e
+tags:
+  1.0.7--hdfd78af_0: 
+    sha256:5f0640f1344f15d702233f5e0d247385914593f6e756af070923dcc5e9d5345e
+docker: quay.io/biocontainers/haphic
+aliases:
+  agp_to_fasta: /usr/local/bin/agp_to_fasta
+  combine_groups.py: /usr/local/bin/combine_groups.py
+  convert_gfa_ids.py: /usr/local/bin/convert_gfa_ids.py
+  fasta_count_N.py: /usr/local/bin/fasta_count_N.py
+  fastq_length_filtering.py: /usr/local/bin/fastq_length_filtering.py
+  filter_bam: /usr/local/bin/filter_bam
+  filter_bam.py: /usr/local/bin/filter_bam.py
+  find_telomeres.py: /usr/local/bin/find_telomeres.py
+  gfa_depth_to_bedGraph.py: /usr/local/bin/gfa_depth_to_bedGraph.py
+  global_chaining.py: /usr/local/bin/global_chaining.py
+  groups_to_clusters.py: /usr/local/bin/groups_to_clusters.py
+  haphic: /usr/local/bin/haphic
+  juicer: /usr/local/bin/juicer
+  juicer_tools.1.9.9_jcuda.0.8.jar: 
+    /usr/local/bin/juicer_tools.1.9.9_jcuda.0.8.jar
+  mock_agp_file.py: /usr/local/bin/mock_agp_file.py
+  mock_blast_file.py: /usr/local/bin/mock_blast_file.py
+  prepare_clusters.py: /usr/local/bin/prepare_clusters.py
+  remove_singletons.py: /usr/local/bin/remove_singletons.py
+  reverse_bed.py: /usr/local/bin/reverse_bed.py
+  qconvex: /usr/local/bin/qconvex
+  qdelaunay: /usr/local/bin/qdelaunay
+  qhalf: /usr/local/bin/qhalf
+  qhull: /usr/local/bin/qhull
+  qvoronoi: /usr/local/bin/qvoronoi
+  rbox: /usr/local/bin/rbox
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
+  hwloc-diff: /usr/local/bin/hwloc-diff
+  hwloc-distrib: /usr/local/bin/hwloc-distrib
+  hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
+  hwloc-info: /usr/local/bin/hwloc-info
+  hwloc-ls: /usr/local/bin/hwloc-ls
+  hwloc-patch: /usr/local/bin/hwloc-patch
+  hwloc-ps: /usr/local/bin/hwloc-ps
+  lstopo: /usr/local/bin/lstopo
+  lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config

quay.io/biocontainers/isodesign/container.yaml

@@ -0,0 +1,76 @@
+url: https://biocontainers.pro/tools/isodesign
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for isodesign
+latest:
+  2.0.1--pyhdfd78af_0: 
+    sha256:e32816854f68890b4f71730ce69c32341915944921937bed0419da9a6f3efda1
+tags:
+  2.0.1--pyhdfd78af_0: 
+    sha256:e32816854f68890b4f71730ce69c32341915944921937bed0419da9a6f3efda1
+docker: quay.io/biocontainers/isodesign
+aliases:
+  ff2ftbl: /usr/local/bin/ff2ftbl
+  ff2ftbl.py: /usr/local/bin/ff2ftbl.py
+  ftbl2code: /usr/local/bin/ftbl2code
+  ftbl2code.py: /usr/local/bin/ftbl2code.py
+  ftbl2cumoAb: /usr/local/bin/ftbl2cumoAb
+  ftbl2cumoAb.py: /usr/local/bin/ftbl2cumoAb.py
+  ftbl2kvh: /usr/local/bin/ftbl2kvh
+  ftbl2kvh.py: /usr/local/bin/ftbl2kvh.py
+  ftbl2labcin: /usr/local/bin/ftbl2labcin
+  ftbl2labcin.py: /usr/local/bin/ftbl2labcin.py
+  ftbl2metxml: /usr/local/bin/ftbl2metxml
+  ftbl2metxml.py: /usr/local/bin/ftbl2metxml.py
+  ftbl2mtf: /usr/local/bin/ftbl2mtf
+  ftbl2mtf.py: /usr/local/bin/ftbl2mtf.py
+  ftbl2netan: /usr/local/bin/ftbl2netan
+  ftbl2netan.py: /usr/local/bin/ftbl2netan.py
+  ftbl2optR: /usr/local/bin/ftbl2optR
+  ftbl2optR.py: /usr/local/bin/ftbl2optR.py
+  ftbl2xgmml: /usr/local/bin/ftbl2xgmml
+  ftbl2xgmml.py: /usr/local/bin/ftbl2xgmml.py
+  h2benchmark: /usr/local/bin/h2benchmark
+  influx_i: /usr/local/bin/influx_i
+  influx_i.py: /usr/local/bin/influx_i.py
+  influx_s: /usr/local/bin/influx_s
+  influx_s.py: /usr/local/bin/influx_s.py
+  isodesign: /usr/local/bin/isodesign
+  protoc-29.3.0: /usr/local/bin/protoc-29.3.0
+  protoc-gen-upb: /usr/local/bin/protoc-gen-upb
+  protoc-gen-upb-29.3.0: /usr/local/bin/protoc-gen-upb-29.3.0
+  protoc-gen-upb_minitable: /usr/local/bin/protoc-gen-upb_minitable
+  protoc-gen-upb_minitable-29.3.0: 
+    /usr/local/bin/protoc-gen-upb_minitable-29.3.0
+  protoc-gen-upbdefs: /usr/local/bin/protoc-gen-upbdefs
+  protoc-gen-upbdefs-29.3.0: /usr/local/bin/protoc-gen-upbdefs-29.3.0
+  res2ftbl_meas: /usr/local/bin/res2ftbl_meas
+  res2ftbl_meas.py: /usr/local/bin/res2ftbl_meas.py
+  streamlit: /usr/local/bin/streamlit
+  streamlit.cmd: /usr/local/bin/streamlit.cmd
+  txt2ftbl: /usr/local/bin/txt2ftbl
+  txt2ftbl.py: /usr/local/bin/txt2ftbl.py
+  watchmedo: /usr/local/bin/watchmedo
+  checksum-profile: /usr/local/bin/checksum-profile
+  elastishadow: /usr/local/bin/elastishadow
+  elastipubsub5: /usr/local/bin/elastipubsub5
+  mqtt5_app: /usr/local/bin/mqtt5_app
+  mqtt5_canary: /usr/local/bin/mqtt5_canary
+  mqtt5canary: /usr/local/bin/mqtt5canary
+  elasticurl: /usr/local/bin/elasticurl
+  elasticurl_cpp: /usr/local/bin/elasticurl_cpp
+  elastipubsub: /usr/local/bin/elastipubsub
+  csv-import: /usr/local/bin/csv-import
+  orc-memory: /usr/local/bin/orc-memory
+  orc-scan: /usr/local/bin/orc-scan
+  timezone-dump: /usr/local/bin/timezone-dump
+  orc-contents: /usr/local/bin/orc-contents
+  orc-metadata: /usr/local/bin/orc-metadata
+  orc-statistics: /usr/local/bin/orc-statistics
+  gflags_completions.sh: /usr/local/bin/gflags_completions.sh
+  x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
+  grpc_cpp_plugin: /usr/local/bin/grpc_cpp_plugin
+  grpc_csharp_plugin: /usr/local/bin/grpc_csharp_plugin
+  grpc_node_plugin: /usr/local/bin/grpc_node_plugin
+  grpc_objective_c_plugin: /usr/local/bin/grpc_objective_c_plugin
+  grpc_php_plugin: /usr/local/bin/grpc_php_plugin
+  grpc_python_plugin: /usr/local/bin/grpc_python_plugin

quay.io/biocontainers/lotus3/container.yaml

@@ -0,0 +1,50 @@
+url: https://biocontainers.pro/tools/lotus3
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for lotus3
+latest:
+  3.03--hdfd78af_1: 
+    sha256:75f2f47dc379e4d2e5b730925e9bbcb9b038324e91f83c7aa1300253a8d60c9b
+tags:
+  3.03--hdfd78af_1: 
+    sha256:75f2f47dc379e4d2e5b730925e9bbcb9b038324e91f83c7aa1300253a8d60c9b
+docker: quay.io/biocontainers/lotus3
+aliases:
+  ITSx: /usr/local/bin/ITSx
+  LCA: /usr/local/bin/LCA
+  amplicon_contingency_table.py: /usr/local/bin/amplicon_contingency_table.py
+  graph_plot.py: /usr/local/bin/graph_plot.py
+  lambda3: /usr/local/bin/lambda3
+  lotus3: /usr/local/bin/lotus3
+  rdp_classifier: /usr/local/bin/rdp_classifier
+  rtk: /usr/local/bin/rtk
+  sdm: /usr/local/bin/sdm
+  swarm: /usr/local/bin/swarm
+  usearch: /usr/local/bin/usearch
+  zipcloak: /usr/local/bin/zipcloak
+  zipnote: /usr/local/bin/zipnote
+  zipsplit: /usr/local/bin/zipsplit
+  gawk-5.3.1: /usr/local/bin/gawk-5.3.1
+  zip: /usr/local/bin/zip
+  funzip: /usr/local/bin/funzip
+  unzipsfx: /usr/local/bin/unzipsfx
+  zipgrep: /usr/local/bin/zipgrep
+  zipinfo: /usr/local/bin/zipinfo
+  iqtree2: /usr/local/bin/iqtree2
+  unzip: /usr/local/bin/unzip
+  vsearch: /usr/local/bin/vsearch
+  bsmp2info: /usr/local/bin/bsmp2info
+  fsa2xml: /usr/local/bin/fsa2xml
+  gbf2info: /usr/local/bin/gbf2info
+  just-top-hits: /usr/local/bin/just-top-hits
+  systematic-mutations: /usr/local/bin/systematic-mutations
+  clustalo: /usr/local/bin/clustalo
+  iqtree: /usr/local/bin/iqtree
+  cd-hit-clstr_2_blm8.pl: /usr/local/bin/cd-hit-clstr_2_blm8.pl
+  FET.pl: /usr/local/bin/FET.pl
+  clstr_list.pl: /usr/local/bin/clstr_list.pl
+  clstr_list_sort.pl: /usr/local/bin/clstr_list_sort.pl
+  cd-hit: /usr/local/bin/cd-hit
+  cd-hit-2d: /usr/local/bin/cd-hit-2d
+  cd-hit-2d-para.pl: /usr/local/bin/cd-hit-2d-para.pl
+  cd-hit-454: /usr/local/bin/cd-hit-454
+  cd-hit-div: /usr/local/bin/cd-hit-div