Skip to content

fix: update groupings and assignments #44

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
adthrasher merged 1 commit into from
Apr 11, 2025
Merged

fix: update groupings and assignments #44

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions dx_app/resources/stjude/bin/generate_plot.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -91,9 +91,9 @@ def label_samples (row):
combined = combined.drop(columns=["samples", "classes", "diagnosisNames"])

# Fill group in a way to avoid duplicates
combined['group'] = combined['group'].fillna('unknown ' + combined['attr_diagnosis_group'])
combined['group'] = combined['group'].fillna('Other ' + combined['attr_diagnosis_group'])
# Fill unknown label values with sj_diseases
combined['label'] = combined['label'].fillna(combined['sj_diseases'])
combined['label'] = combined['label'].fillna(combined['sj_long_disease_name'])
# Fill unknown colors with black
combined['color'] = combined['color'].replace('Classification_tSNE_color (Manuscript)', 'black')
# Fill remaining missing metadata values with 'unknown'
Expand Down
Loading