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Jan 13, 2022 - HTML
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deseq2
Here are 128 public repositories matching this topic...
RNA-seq workflow using STAR and DESeq2
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Dec 4, 2025 - Python
Brings bulk and pseudobulk transcriptomics to the tidyverse
pipe tidy-data tidyverse pca bioconductor deseq2 entrez tidy transcripts transcriptomics tsne differential-expression edger redundancy gsea tibble gene-symbols bulk-transcriptional-analyses mds-dimensions ensembl-ids
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Nov 12, 2025 - R
Transcript quantification import for modular pipelines
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Sep 30, 2025 - R
Statistical Analysis of RNA-Seq Tools
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Oct 9, 2025 - R
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
workflow rna-seq pipeline nextflow shiny deseq2 microarray chip-seq atac-seq differential-expression limma gsea nf-core differential-abundance
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Dec 9, 2025 - Nextflow
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Mar 23, 2021 - R
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
count gene r human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount
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Dec 12, 2024 - R
Differential gene expression analysis and pathway analysis of RNAseq data
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Jul 3, 2025 - Nextflow
This RNAseq data analysis tutorial is created for educational purpose
tutorial rna-seq r analysis ngs gene-expression pca-analysis rnaseq deseq2 bioconductor-packages enrichment-analysis edger ngs-analysis rnaseq-workshop reactome-pathway rnaseq-pipeline rna-seq-dge
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Sep 30, 2025 - R
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
docker bioinformatics rna-seq web-application deseq2 shiny-apps single-cell bioinformatics-analysis seurat nasqar
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Apr 19, 2020 - HTML
TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis
bioinformatics quality-control rna-seq snakemake conda singularity deseq2 ideal reproducibility high-throughput transcriptomics salmon differential-expression snakemake-workflow pathway-enrichment-analysis renv clusterprofiler apptainer genetonic pcaexplorer
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Nov 26, 2025 - R
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
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Dec 7, 2024
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
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May 7, 2021 - Jupyter Notebook
a web-based R shiny application that wraps DESeq2 R package
visualization bioinformatics rna-seq r shiny rshiny deseq2 rna-seq-analysis shinyapps webapplication bulk-rna-seq
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Apr 19, 2020 - R
An application for exploring and visualizing differential gene expression data created with DESeq2
visualization rna-seq deseq2 transcriptome transcriptomics differential-expression differential-gene-expression deseq2-analysis
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Apr 10, 2024 - Vue
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