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Pull requests: vgteam/vg

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Pull requests list

Fix vg call bug tagging nested snarls as LV=0
#4809 opened Jan 23, 2026 by xchang1 Loading…
Add a fragment length for a pair even if rescue fails
#4806 opened Jan 22, 2026 by adamnovak Loading…
Document the range sweep feature of Giraffe better
#4805 opened Jan 21, 2026 by adamnovak Loading…
[WIP] Alt path cover
#4804 opened Jan 21, 2026 by glennhickey Loading…
Autoindex oversized
#4801 opened Jan 14, 2026 by faithokamoto Loading…
1
4
Strip the parts HX Antimalware doesn't like the look of out of test/build_graph
#4800 opened Jan 12, 2026 by adamnovak Loading…
Add --reference-bonus to bias surjection towards reference paths
#4786 opened Jan 5, 2026 by JosephLalli • Draft
3
More-scalable reachability edge finding for surject
#4764 opened Dec 3, 2025 by adamnovak • Draft
Snarl child count
#4706 opened Sep 30, 2025 by xchang1 Loading…
1
[WIP] add tag for allele number to call output
#4665 opened Jul 23, 2025 by glennhickey Loading…
Keep haplotypes in vg chunk that don't extend far enough
#4501 opened Jan 21, 2025 by adamnovak Loading…
add --snarl-outlier option
#4484 opened Dec 20, 2024 by glennhickey Loading…
More complete rGFA support (experimental)
#4113 opened Oct 4, 2023 by glennhickey Loading…
4
Coverage maps in progress
#1894 opened Sep 27, 2018 by ekg Loading…
@ekg
2
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