Retrain before retagging#16

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pdan93 wants to merge 106 commits intowellcometrust:mainfrom

MantisAI:retrain_before_retagging

Commits on Sep 8, 2023

Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
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Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
committed
Prototype for retagging using spacy
Jose J. Martinez
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Prototype for retagging using spacy
Jose J. Martinez
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Changes to cNN
Jose J. Martinez
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Changes to cNN
Jose J. Martinez
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Adds cpu and gpu
Jose J. Martinez
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Adds large model
Jose J. Martinez
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Adds large model
Jose J. Martinez
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Adds sparknlp
Jose J. Martinez
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Adds sparknlp
Jose J. Martinez
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Different config of sparknlp
Ubuntu
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Fixes pipeline
Jose J. Martinez
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Prototypes retagging after training
Jose J. Martinez
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Prototypes retagging after training
Jose J. Martinez
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Prototypes retagging after training
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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Saves corrections
Jose J. Martinez
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500 rows for better accuracy
Jose J. Martinez
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Commits on Sep 9, 2023

Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds batching and refactors prediction
Jose J. Martinez
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Adds some logging, refactors
Jose J. Martinez
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Commits on Sep 10, 2023

Adds pure spark
Jose J. Martinez
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Commits on Sep 11, 2023

Adds pure spark
Jose J. Martinez
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Adds spark.repartition
Jose J. Martinez
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Adds spark.repartition
Jose J. Martinez
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Adds parquet optimization
Jose J. Martinez
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Adds parquet optimization
Jose J. Martinez
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Adds parquet optimization
Jose J. Martinez
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Adds spark context config
josejuanmartinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Spark config
Jose J. Martinez
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Commits on Sep 12, 2023

Remove duplicates and add reference number'
nsorros
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Switch to save in excel format
nsorros
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Run pre-commit
Ubuntu
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Adds documentation, configurable tags, years, memory
Jose J. Martinez
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Add openpyxl to support excel
Ubuntu
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Run dvc
Ubuntu
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Total refactor: XLinear
Jose J. Martinez
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Commits on Sep 13, 2023

Total refactor finished for retagging: XLinear
Jose J. Martinez
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Black
Jose J. Martinez
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Adds retagging tests and updates documentation
Jose J. Martinez
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Adds retagging tests and updates documentation
Jose J. Martinez
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Black
Jose J. Martinez
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rufus
Jose J. Martinez
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rufus and black
Jose J. Martinez
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black
Jose J. Martinez
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Removes spacy
Jose J. Martinez
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Commits on Sep 14, 2023

Merge pull request #16 from MantisAI/fix-wellcome-active-sample
nsorros
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Adds tests for augment
Jose J. Martinez
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Black
Jose J. Martinez
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Better error management. Black
josejuanmartinez
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"Better error management. Black"
Jose J. Martinez
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Ruff
Jose J. Martinez
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Merge branch 'main' into retagging
Jose J. Martinez
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Feedback from PR comments. Merging latest main into this branch.
Jose J. Martinez
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Black
Jose J. Martinez
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Adds retagging dvc data
Jose J. Martinez
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Adds retagging dvc data
Jose J. Martinez
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Adds retagging dvc data
Jose J. Martinez
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Changes reference fail from original to retagged
Jose J. Martinez
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Changes reference fail from original to retagged
Jose J. Martinez
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Adds mkdir to yaml
josejuanmartinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Adds two steps to the dvc pipeline
Jose J. Martinez
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Default wandb
Jose J. Martinez
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Documentation about wandb and dvc repro
Jose J. Martinez
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12 epochs
Jose J. Martinez
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Commits on Sep 15, 2023

Fixex bug with the batch calculation
Jose J. Martinez
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black
josejuanmartinez
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Merge pull request #17 from MantisAI/retagging
josejuanmartinez
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Adds last trained model
josejuanmartinez
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Commits on Sep 16, 2023

Adds last metrics bertmesh
josejuanmartinez
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Commits on Sep 19, 2023

tag all active grants

nsorros
authored and
Ubuntu
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Commits on Oct 17, 2023

Merge pull request #18 from MantisAI/active-grants
nsorros
authored

Commits on Oct 24, 2023

:wrench: change to steps saving / eval strategy
agombert
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Commits on Nov 1, 2023

retrained evaluation
agombert
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