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docker build -t deepfossil:latest . && docker run --rm -v ~/.deepinfer/.tmp:/home/deepinfer/data deepfossil:latest --InputVolume /home/deepinfer/data/testInput --OutputLabel /home/deepinfer/data/labels.nrrd

docker build -t deepfossil:latest . &&
docker run --rm
-v "/Users/whitede/Dropbox (Smithsonian)/CT projects/Sphenodon_Slicer-Mimics-test/DeepFossil":/home/deepinfer/data
deepfossil:latest
--InputVolume /home/deepinfer/data/Sphenodon_halfsized.nrrd
--OutputLabel /home/deepinfer/data/labels.nrrd

docker build -t deepfossil:latest . &&
docker run
-v "/Users/whitede/Dropbox (Smithsonian)/CT projects/CT-Ceratosaurus/slicer":/home/deepinfer/data
deepfossil:latest
--InputVolume /home/deepinfer/data/CeratosaurusDicom2.nrrd
--OutputLabel /home/deepinfer/data/Ceratosaurus_deepfossil_labels.seg.nrrd

docker build -t deepfossil:latest . && docker run --rm -v "/Users/whitede/Dropbox (Smithsonian)/CT projects/CT-Ceratosaurus/slicer":/home/deepinfer/data deepfossil:latest --InputVolume /home/deepinfer/data/CeratosaurusDicom2.nrrd --OutputLabel /home/deepinfer/data/Ceratosaurus_deepfossil_labels.nrrd

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Deep learning for paleontological CT segmentation using Slicer and DeepInfer

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