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Clean up Rich records

enhancement

pick me up!

Status: Closed (completed).

#577 In bigdatagenomics/adam;

· by fnothaft was closed on Mar 20, 2017

Create ADAM Benchmarking suite

enhancement

Status: Closed (completed).

#120 In bigdatagenomics/adam;

· by fnothaft was closed on Mar 3, 2017

Enforce semantic versioning

enhancement

Status: Closed (completed).

#338 In bigdatagenomics/adam;

· by fnothaft was closed on May 23, 2022

Remove reliance on MD tags

Status: Closed (completed).

#622 In bigdatagenomics/adam;

· by fnothaft was closed on Mar 3, 2017

Clean up packaging of conversion methods

enhancement

Status: Closed (completed).

#1170 In bigdatagenomics/adam;

· by fnothaft was closed on Jun 24, 2019

Release ADAM version 1.0.0

discussion

documentation

Status: Closed (completed).

#1089 In bigdatagenomics/adam;

· by fnothaft was closed on May 23, 2022

Update Spark dependency version to 3.2.1

Status: Closed (completed).

#2353 In bigdatagenomics/adam;

· by heuermh was closed on Jan 31, 2022

Benchmark spark.kryo.unsafe config performance

Status: Closed (completed).

#2303 In bigdatagenomics/adam;

· by heuermh was closed on May 10, 2022

Add CITATION.cff for citation(s)

Status: Closed (completed).

#2329 In bigdatagenomics/adam;

· by heuermh was closed on May 10, 2022

Add references parameter to transformSequences/transformSequences/countKmers etc.

Status: Closed (completed).

#2364 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

Add maximum length parameter to countSliceKmers

Status: Closed (completed).

#2365 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

Kmers overcounted in Slice countKmers

Status: Closed (completed).

#2362 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

Add sort output parameter to countKmers/countSliceKmers

Status: Closed (completed).

#2363 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

Update bdg-utils dependency version to 1.0

Status: Closed (completed).

#2370 In bigdatagenomics/adam;

· by heuermh was closed on May 19, 2022

Update bdg-formats dependency version to 1.0

Status: Closed (completed).

#2371 In bigdatagenomics/adam;

· by heuermh was closed on May 19, 2022

Features without strand NPE in printFeatureAttributes

Status: Closed (completed).

#2357 In bigdatagenomics/adam;

· by heuermh was closed on Mar 8, 2022

Update scala-guice dependency version to 5.0.2, guava to 31.1-jre

Status: Merged (completed).

bigdatagenomics/adamnumber 2359

#2359 In bigdatagenomics/adam;

· by heuermh was closed on Mar 29, 2022

Update bdg-formats dependency version to 1.0

Status: Merged (completed).

bigdatagenomics/adamnumber 2373

#2373 In bigdatagenomics/adam;

· by heuermh was closed on May 19, 2022

Update bdg-utils dependency version to 1.0

Status: Merged (completed).

bigdatagenomics/adamnumber 2372

#2372 In bigdatagenomics/adam;

· by heuermh was closed on May 19, 2022

Feature strand may be null

Status: Merged (completed).

bigdatagenomics/adamnumber 2358

#2358 In bigdatagenomics/adam;

· by heuermh was closed on Mar 8, 2022

Allow space in IntervalList species header value

Status: Merged (completed).

bigdatagenomics/adamnumber 2356

#2356 In bigdatagenomics/adam;

· by heuermh was closed on Mar 8, 2022

Add IUPAC amino acid and nucleotide base alphabet with ambiguity

Status: Merged (completed).

bigdatagenomics/adamnumber 2360

#2360 In bigdatagenomics/adam;

· by heuermh was closed on Apr 29, 2022

Add count kmers methods to SequenceDataset

Status: Merged (completed).

bigdatagenomics/adamnumber 2368

#2368 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

[ADAM-2362] Account for duplicate kmers on left flank

Status: Merged (completed).

bigdatagenomics/adamnumber 2366

#2366 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022

Add sort and maximum length arguments

Status: Merged (completed).

bigdatagenomics/adamnumber 2367

#2367 In bigdatagenomics/adam;

· by heuermh was closed on May 9, 2022