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AnnotationHub returns poor results in lcdbwf

Status: Open.

#432 In lcdb/lcdb-wf;

· njohnso6 opened on Feb 28, 2025

Configure functional enrichment to work with GSEA

Status: Open.

#424 In lcdb/lcdb-wf;

· b-full opened on Dec 13, 2024

FDR cutoff alpha not applied in rnaseq.Rmd

Status: Open.

#422 In lcdb/lcdb-wf;

· Mira0507 opened on Dec 3, 2024

use fasterq-dump

Status: Open.

#409 In lcdb/lcdb-wf;

· daler opened on Oct 8, 2024

SRA runs should save data elsewhere and then symlink

Status: Open.

#408 In lcdb/lcdb-wf;

· daler opened on Oct 8, 2024

Layout rather than LibraryLayout

Status: Open.

#407 In lcdb/lcdb-wf;

· daler opened on Oct 8, 2024

Add hyperlink to rnaseq.Rmd error message, 'duplicate names found after removing pattern ^contr_[^_]+_'

Status: Open.

#395 In lcdb/lcdb-wf;

· menoldmt opened on Nov 28, 2023

In functional-enrichment.Rmd and gene-patterns.Rmd, add config for turning on/off lazy caching

Status: Open.

#391 In lcdb/lcdb-wf;

· menoldmt opened on Aug 16, 2023

Automatic plot resizing in gene-patterns

Status: Open.

#390 In lcdb/lcdb-wf;

· menoldmt opened on Aug 16, 2023

Add Functional Enrichment TSV Links to functional-enrichment.Rmd

Status: Open.

#389 In lcdb/lcdb-wf;

· menoldmt opened on Aug 16, 2023

Typographical errors in Gene-Patterns Explanatory Text

Status: Open.

#388 In lcdb/lcdb-wf;

· menoldmt opened on Aug 16, 2023

In gene-patterns.Rmd, ensure factors for certain colData used in gene patterns

Status: Open.

#387 In lcdb/lcdb-wf;

· menoldmt opened on Aug 16, 2023