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Add cochlear nerve root term (UBERON:7770009) #3571

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Add cochlear nerve root term (UBERON:7770009) #3571

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e355dcd
Add cochlear nerve root term (UBERON:7770009)
Jun 27, 2025
cfb49ef
Remove namespace tag from cochlear nerve root term (UBERON:7770009)
Jul 4, 2025
e4acdb6
Merge branch 'master' into issue-3570
RiveraAndrea83 Jul 7, 2025
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9 changes: 9 additions & 0 deletions src/ontology/uberon-edit.obo
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Expand Up @@ -221148,6 +221148,15 @@ intersection_of: part_of UBERON:0001159 ! sigmoid colon
relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 ! David Osumi-Sutherland
property_value: dcterms-date "2025-05-27T17:07:22Z" xsd:dateTime

[Term]
id: UBERON:7770009
name: cochlear nerve root
def: "Continuation of the cochlear nerve inside the brain. This is located at the dorsolateral junction of the pons and medulla and divides the ventral cochlear nucleus into anteroventral and posteroventral regions." [PMID:27289629]
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@gouttegd gouttegd Jun 27, 2025 •
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(1) That namespace tag is not needed, since uberon is already the default namespace in the entire file. Not sure where the agent took the “inspiration” for that tag, given that no other term frame in uberon-edit.obo has such a tag.

(2) That tag causes the check-obo-for-standard-release.pl script to raise an error because it perceives the term as having a different namespace than its UBERON:0002211 parent. (The correctness of that check is dubious: yes, UBERON:0002211 does not have an explicit namespace, but it does inherit the default namespace declared in the header, and therefore is in fact in the uberon namespace – but apparently the script only takes into account term-level namespace tags, not the default namespace.)

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@cmungall cmungall Jul 3, 2025

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Human error https://github.com/obophenotype/uberon/blob/master/CLAUDE.md#obo-format-guidelines

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@cmungall cmungall Jul 3, 2025

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#3578

is_a: UBERON:0002211 ! nerve root
relationship: part_of UBERON:0000955 ! brain
relationship: dc-contributor https://orcid.org/0000-0002-8688-6599 ! @dragon-ai-agent
property_value: dcterms-date "2025-06-27T12:00:00Z" xsd:dateTime

[Term]
id: UBERON:8000000
name: first instar larva stage
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